PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 36139
Common NameSELMODRAFT_451784
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family NAC
Protein Properties Length: 155aa    MW: 18157.6 Da    PI: 9.7783
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
36139genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM183.16.8e-5711301129
    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101
            +ppGfrFhPtdeelv +yL+kkv++kk++l +vi+e+d+yk+ePwdL++  k+ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++ k +l+g
  36139   1 VPPGFRFHPTDEELVGYYLQKKVASKKIDL-DVIHEIDLYKLEPWDLHEkcKIGSaEQTEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIHA-KYKLIG 102
            69****************************.9***************852444333666*************************************9.999*** PP

    NAM 102 lkktLvfykgrapkgektdWvmheyrle 129
            ++ktLvfy+grap+g+ktdW+mheyrle
  36139 103 MRKTLVFYRGRAPNGQKTDWIMHEYRLE 130
            **************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100559.5131153IPR003441NAC domain
SuperFamilySSF1019412.48E-612153IPR003441NAC domain
PfamPF023656.6E-302129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
VPPGFRFHPT DEELVGYYLQ KKVASKKIDL DVIHEIDLYK LEPWDLHEKC KIGSAEQTEW  60
YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIHAKYKL IGMRKTLVFY RGRAPNGQKT  120
DWIMHEYRLE EDISSSGSNN NDDGWVVCRV FKKRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swp_D7e-56115520170NAC domain-containing protein 19
3swp_C7e-56115520170NAC domain-containing protein 19
3swp_B7e-56115520170NAC domain-containing protein 19
3swp_A7e-56115520170NAC domain-containing protein 19
3swm_D7e-56115520170NAC domain-containing protein 19
3swm_C7e-56115520170NAC domain-containing protein 19
3swm_B7e-56115520170NAC domain-containing protein 19
3swm_A7e-56115520170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002976910.11e-115ANAC012/NST3/SND1, specific transcriptional repressor/ transcription activator/ transcription factor-like protein, partial
RefseqXP_002976911.11e-114hypothetical protein SELMODRAFT_451784
RefseqXP_002980632.11e-115hypothetical protein SELMODRAFT_57388, partial
SwissprotQ9SL412e-89NAC37_ARATH; NAC domain-containing protein 37
TrEMBLD8S0Z91e-114D8S0Z9_SELML; Putative uncharacterized protein
TrEMBLD8S1001e-115D8S100_SELML; ANAC012/NST3/SND1, specific transcriptional repressor/ transcription activator/ transcription factor-like protein (Fragment)
TrEMBLD8SBM81e-115D8SBM8_SELML; Putative uncharacterized protein VND3-2 (Fragment)
STRINGEFJ182831e-114(Selaginella moellendorffii)
STRINGEFJ220211e-113(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.17e-78vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]